Checkmarx scanner reference for STO
You can scan your repositories using Checkmarx. Harness STO supports the following workflows:
- Ingestion workflows for all Checkmarx One services (including SAST and SCA) that can publish scan results in SARIF format. For more information, go to Ingest SARIF results.
- Orchestration, Extraction, and Ingestion workflows for Checkmarx SAST and Checkmarx SCA scans.
Important notes for running Checkmarx scans in STO
Docker-in-Docker requirements
The following use cases require a Docker-in-Docker background step in your pipeline:
- Container image scans on Kubernetes and Docker build infrastructures
- Required for Orchestration and Dataload scan modes
- Security steps (not step palettes) on Kubernetes and Docker build infrastructures
- Required for all target types and Orchestration/DataLoad modes
The following use cases do not require Docker-in-Docker:
- Harness Cloud AMD64 build infrastructures
- SAST/DAST/configuration scans that use scanner templates (not Security steps)
- Ingestion scans where the data file has already been generated
Set up a Docker-in-Docker background step
-
Go to the stage where you want to run the scan.
-
In Overview, add the shared path
/var/run
. -
In Execution, do the following:
-
Click Add Step and then choose Background.
-
Configure the Background step as follows:
-
Dependency Name =
dind
-
Container Registry = The Docker connector to download the DinD image. If you don't have one defined, go to Docker connector settings reference.
-
Image =
docker:dind
-
Under Entry Point, add the following:
dockerd
In most cases, using
dockerd
is a faster and more secure way to set up the background step. For more information, go to the TLS section in the Docker quick reference.
If the DinD service doesn't start with
dockerd
, clear the Entry Point field and then run the pipeline again. This starts the service with the default entry point.- Under Optional Configuration, select the Privileged checkbox.
-
-
- Visual setup
- YAML setup

Add a Background step to your pipeline and set it up as follows:
- step:
type: Background
name: background-dind-service
identifier: Background_1
spec:
connectorRef: CONTAINER_IMAGE_REGISTRY_CONNECTOR
image: docker:dind
shell: Sh
entrypoint:
- dockerd
privileged: true
Root access requirements
You need to run the scan step with root access if either of the following apply:
-
You need to run a Docker-in-Docker background service.
-
You need to add trusted certificates to your scan images at runtime.
You can set up your STO scan images and pipelines to run scans as non-root and establish trust for your own proxies using self-signed certificates. For more information, go to Configure STO to Download Images from a Private Registry.
For more information
The following topics contain useful information for setting up scanner integrations in STO:
Checkmarx step settings for STO scans
The recommended workflow is add a Checkmarx step to a Security Tests or CI Build stage and then configure it as described below.
Scan
Scan Mode
- Orchestration Configure the step to run a scan and then ingest, normalize, and deduplicate the results.
- Extraction Configure the step to extract scan results from an external SaaS service and then ingest, normalize, and deduplicate the data.
- Ingestion Configure the step to read scan results from a data file and then ingest, normalize, and deduplicate the data.
Scan Configuration
The predefined configuration to use for the scan. All scan steps have at least one configuration.
Target
Type
-
Repository Scan a codebase repo.
In most cases, you specify the codebase using a code repo connector that connects to the Git account or repository where your code is stored. For information, go to Configure codebase.
Name
The identifier for the target, such as codebaseAlpha
or jsmith/myalphaservice
. Descriptive target names make it much easier to navigate your scan data in the STO UI.
It is good practice to specify a baseline for every target.
Variant
The identifier for the specific variant to scan. This is usually the branch name, image tag, or product version. Harness maintains a historical trend for each variant.
Workspace
The workspace path on the pod running the scan step. The workspace path is /harness
by default.
You can override this if you want to scan only a subset of the workspace. For example, suppose the pipeline publishes artifacts to a subfolder /tmp/artifacts
and you want to scan these artifacts only. In this case, you can specify the workspace path as /harness/tmp/artifacts
.
Ingestion File
The path to your scan results when running an Ingestion scan, for example /shared/scan_results/myscan.latest.sarif
.
-
The data file must be in a supported format for the scanner.
-
The data file must be accessible to the scan step. It's good practice to save your results files to a shared path in your stage. In the visual editor, go to the stage where you're running the scan. Then go to Overview > Shared Paths. You can also add the path to the YAML stage definition like this:
- stage:
spec:
sharedPaths:
- /shared/scan_results
Authentication
Domain
The fully-qualified URL to the scanner.
Enforce SSL
The step and the scanner communicate over SSL by default. Set this to false to disable SSL (not safe).
Access ID
The username to log in to the scanner.
Access Token
The access token to log in to the scanner. In most cases this is a password or an API key.
You should create a Harness text secret with your encrypted token and reference the secret using the format <+secrets.getValue("project.my-access-token")>
. For more information, go to Add and Reference Text Secrets.
Scan Tool
Team Name
The Checkmarx team name. Use the format /<
server-name
>/<
team-name
>
— for example, /server1.myorg.org/devOpsEast
.
Project Name
The name of the scan project as defined in the scanner. This is the also the target name in the Harness UI (Security Tests > Test Targets).
Log Level, CLI flags, and Fail on Severity
Log Level
The minimum severity of the messages you want to include in your scan logs. You can specify one of the following:
- DEBUG
- INFO
- WARNING
- ERROR
Additional CLI flags
You can use this field to run the Checkmarx plugin with specific command-line arguments. To run an incremental scan, for example, specify -incremental
.
Running incremental scans with Checkmarx
In some cases, you might want to run an incremental rather than a full scan with Checkmarx due to time or licensing limits. An incremental scan evaluates only new or changed code in a merge or pull request. Incremental scans are faster than full scans, but become less accurate over time.
Consider carefully when to run incremental vs. full scans. See When should I use Incremental Scans vs Full Scans in CxSAST? in the Checkmarx documentation.
Fail on Severity
Every Security step has a Fail on Severity setting. If the scan finds any vulnerability with the specified severity level or higher, the pipeline fails automatically. You can specify one of the following:
CRITICAL
HIGH
MEDIUM
LOW
INFO
NONE
— Do not fail on severity
The YAML definition looks like this: fail_on_severity : critical # | high | medium | low | info | none
Settings
You can use this field to provide environment variables to be used during the execution of the step. For example, if you need to access your Checkmarx server through a proxy, you can add this setting:
- key =
JAVA_TOOL_OPTIONS
- value =
-DproxySet=true -Dhttp.proxyHost=MY_PROXY_ADDRESS -Dhttp.proxyPort=MY_PROXY_PORT
Replace MY_PROXY_ADDRESS
with your proxy address or proxy FQDN, and MY_PROXY_PORT
with your proxy port.
If you want to go through an HTTPS proxy, replace -Dhttp
with -Dhttps
.
Exclude issues marked as Not Exploited
You can configure the Checkmarx ingestion step to exclude issues detected by Checkmarx but flagged as Not Exploitable. To enable this setting, add the following key-value pair under Settings:
hide_not_exploitable
: True
Additional Configuration
In the Additional Configuration settings, you can use the following options:
Advanced settings
In the Advanced settings, you can use the following options:
Example workflow: Ingest SARIF data from a Checkmarx GitHub Action scan
The following pipeline example illustrates an ingestion workflow. It consists of two steps:
- An Action step scans a code repo using a Checkmarx GitHub Action and export the scan results to a SARIF data file.
- A Checkmarx step that ingests the SARIF data.
pipeline:
projectIdentifier: STO
orgIdentifier: default
tags: {}
properties:
ci:
codebase:
connectorRef: GITHUB_CONNECTOR
repoName: https://github.com/OWASP/NodeGoat
build: <+input>
stages:
- stage:
name: CheckmarxSCA
identifier: checkmarxone
type: CI
spec:
cloneCodebase: true
execution:
steps:
- step:
type: Action
name: Checkmarx Scan GHA
identifier: CxFlow
spec:
uses: checkmarx-ts/checkmarx-cxflow-github-action@v1.6
with:
project: SampleProject
team: /CxServer/nzsouth
scanners: sca
checkmarx_url: <+secrets.getValue("my-checkmarx-url")>
checkmarx_username: zeronorth
checkmarx_password: <+secrets.getValue("my-checkmarx-password")>
checkmarx_client_secret: <+secrets.getValue("my-checkmarx-client-secret")>
sca_username: harness
sca_password: <+secrets.getValue("my-sca-passeword")>
sca_tenant: cxIntegrations
break_build: false
- step:
type: Checkmarx
name: ingest-cmarx
identifier: Checkmarx_1
spec:
mode: ingestion
config: default
target:
name: <+pipeline.name>
type: repository
variant: dev
advanced:
log:
level: debug
runAsUser: "1001"
ingestion:
file: /harness/cx.sarif
platform:
os: Linux
arch: Amd64
runtime:
type: Cloud
spec: {}
sharedPaths:
- /shared/scan_results/
identifier: CheckmarxGitAction
name: CheckmarxGitAction